6.4. References

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Last update: June 2023

Barataud, M. (2012). Ecologie acoustique des chiroptères d’Europe. Identification des espèces, étude de leurs habitats et comportement de chasse. (4th ed.). Muséum national d’Histoire naturelle, Paris ; Biotope, Mèze, 360 pp. https://sciencepress.mnhn.fr/fr/collections/inventaires-biodiversite/ecologie-acoustique-des-chiropteres-d-europe-3

Berger‐Tal, O., Blumstein, D. T., Carroll, S., Fisher, R. N., Mesnick, S. L., Owen, M. A., Saltz, D., St. Claire, C. C., & Swaisgood, R. R. (2016). A systematic survey of the integration of animal behavior into conservation. Conservation Biology, 30(4), 744–753. https://doi.org/10.1111/cobi.12654

Buehler, D. A., Mersmann, T. J., Fraser, J. D., & Seegar, J. K. D. (1991). Nonbreeding Bald Eagle Communal and Solitary Roosting Behavior and Roost Habitat on the Northern Chesapeake Bay. The Journal of Wildlife Management, 55(2), 273-281. https://doi.org/10.2307/3809150

Claireau, F., Kerbiriou, C., Charton, F., Braga, C. D. A., Ferraille, T., Julien, J.-F., Machon, N., Allegrini, B., Puechmaille, S. J., & Bas, Y. (2021). Bat Overpasses Help Bats to Cross Roads Safely by Increasing Their Flight Height. Acta Chiropterologica, 23(1), 189-198. https://doi.org/10.3161/15081109ACC2021.23.1.015

Daroux, A., Martignac, F., & Guillard, J. (2014). Utilisation de la caméra acoustique DIDSON pour le suivi en rivière des poissons migrateurs. Cahier des Techniques de l’INRA, 83(3), 1-8. https://hal.science/hal-01210252/document

Doran, G.T. (1981). There’s a S.M.A.R.T. way to write management’s goals and objectives. Management Review, 70, 35-36. https://community.mis.temple.edu/mis0855002fall2015/files/2015/10/S.M.A.R.T-Way-Management-Review.pdf

Duggan, M. T., Groleau, M. F., Shealy, E. P., Self, L. S., Utter, T. E., Waller, M. M., Hall, B. C., Stone, C. G., Anderson, L. L., & Mousseau, T. A. (2021). An approach to rapid processing of camera trap images with minimal human input. Ecology and Evolution, 11(17), 12051–12063. https://doi.org/10.1002/ece3.7970

European Environment Agency. (2016). Quiet areas in Europe: The environment unaffected by noise pollution. Publications Office. https://data.europa.eu/doi/10.2800/7586

Falzon, G., Lawson, C., Cheung, K.-W., Vernes, K., Ballard, G. A., Fleming, P. J. S., Glen, A. S., Milne, H., Mather-Zardain, A., & Meek, P. D. (2019). ClassifyMe: A Field-Scouting Software for the Identification of Wildlife in Camera Trap Images. Animals, 10(1), 58. https://doi.org/10.3390/ani10010058

Green, S. E., Rees, J. P., Stephens, P. A., Hill, R. A., & Giordano, A. J. (2020). Innovations in Camera Trapping Technology and Approaches: The Integration of Citizen Science and Artificial Intelligence. Animals, 10(1), 132. https://doi.org/10.3390/ani10010132

Hellawell, J. M. (1991). Development of a rationale for monitoring. In : B. Goldsmith (Ed.), Monitoring for Conservation and Ecology (1st ed., pp. 1–14). Springer Netherlands. https://doi.org/10.1007/978-94-011-3086-8_1

Herder, J. E., Valentini, A., Bellemain, E., Dejean, T., van Delft, J.J.C.W., Thomsenand, P.F., & Taberlet, P. (2014). Environmental DNA – a review of the possible applications for thedetection of (invasive) species. Stichting RAVON, Nijmegen. Report 2013-104. https://doi.org/10.13140/RG.2.1.4002.1208

Jouventin, P., & Weimerskirch, H. (1990). Satellite tracking of Wandering albatrosses. Nature, 343(6260), 746–748. https://doi.org/10.1038/343746a0

Lindenmayer, D. B., & Likens, G. E. (2010). The science and application of ecological monitoring. Biological Conservation, 143(6), 1317–1328. https://doi.org/10.1016/j.biocon.2010.02.013

Marcot, B. G., Lorenz, T. J., Fischer, P., Weinstein, B. G., & Cowell, S. (2019). Efficacy of automated detection of motion in wildlife monitoring videos. Wildlife Society Bulletin, 43(4), 726–736. https://doi.org/10.1002/wsb.1016

Meek, P. D., Ballard, G.-A., Fleming, P. J. S., Schaefer, M., Williams, W., & Falzon, G. (2014). Camera Traps Can Be Heard and Seen by Animals. PLoS ONE, 9(10), e110832. https://doi.org/10.1371/journal.pone.0110832

Murphy, C., & Sebikali, B. (2014). Guide to Optimizing Performance and Quality: Stages, Steps, and Tools. IntraHealth International, Chapel Hill. April 2014. https://www.intrahealth.org/opq/index.html%3Fp=82.html#stage-content

Norouzzadeh, M. S., Morris, D., Beery, S., Joshi, N., Jojic, N., & Clune, J. (2019). A deep active learning system for species identification and counting in camera trap images. Methods in Ecology and Evolution, 12, 150–161. https://doi.org/10.48550/arXiv.1910.09716

Norouzzadeh, M. S., Nguyen, A., Kosmala, M., Swanson, A., Palmer, M. S., Packer, C., & Clune, J. (2018). Automatically identifying, counting, and describing wild animals in camera-trap images with deep learning. Proceedings of the National Academy of Sciences, 115(25). https://doi.org/10.1073/pnas.1719367115

Ouédraogo, D.-Y., Villemey, A., Vanpeene, S., Coulon, A., Azambourg, V., Hulard, M., Guinard, E., Bertheau, Y., Flamerie De Lachapelle, F., Rauel, V., Le Mitouard, E., Jeusset, A., Vargac, M., Witté, I., Jactel, H., Touroult, J., Reyjol, Y., & Sordello, R. (2020). Can linear transportation infrastructure verges constitute a habitat and/or a corridor for vertebrates in temperate ecosystems? A systematic review. Environmental Evidence, 9(1), 13. https://doi.org/10.1186/s13750-020-00196-7

Price Tack, J. L., West, B. S., McGowan, C. P., Ditchkoff, S. S., Reeves, S. J., Keever, A. C., & Grand, J. B. (2016). AnimalFinder: A semi-automated system for animal detection in time-lapse camera trap images. Ecological Informatics, 36, 145–151. https://doi.org/10.1016/j.ecoinf.2016.11.003

Rigoudy, N., Dussert, G., Benyoub, A., Besnard, A., Birck, C., Boyer, J., Bollet, Y., Bunz, Y., Caussimont, G., Chetouane, E., Carriburu, J. C., Cornette, P., Delestrade, A., De Backer, N., Dispan, L., Le Barh, M., Duhayer, J., Elder, J.-F., Fanjul, J.-B., … & Chamaillé-Jammes, S. (2022). The DeepFaune initiative: A collaborative effort towards the automatic identification of French fauna in camera-trap images. bioRxiv. https://doi.org/10.1101/2022.03.15.484324

Roedenbeck, I. A., Fahrig, L., Findlay, C. S., Houlahan, J. E., Jaeger, J. A. G., Klar, N., Kramer-Schadt, S., & Van Der Grift, E. A. (2007). The Rauischholzhausen Agenda for Road Ecology. Ecology and Society, 12(1), art11. https://doi.org/10.5751/ES-02011-120111

Rovero, F., Zimmermann, F., Bersi, D., & Meek, P. (2013). ‘Which camera trap type and how many do I need?’ A review of camera features and study designs for a range of wildlife research applications. Hystrix. Italian Journal of Mammology, 24(2), 148-156. https://doi.org/10.4404/hystrix-24.2-8789

Sordello, R., Bertheau, Y., Coulon, A., Jeusset, A., Ouédraogo, D.-Y., Vanpeene, S., Vargac, M., Villemey, A., Witté, I., Reyjol, Y., & Touroult, J. (2019). Les protocoles expérimentaux en écologie. Principaux points clefs. UMS PatrNat, CESCO, Irstea. https://inpn.mnhn.fr/docs-web/docs/download/247457

Sueur, J., & Farina, A. (2015). Ecoacoustics: The Ecological Investigation and Interpretation of Environmental Sound. Biosemiotics, 8(3), 493–502. https://doi.org/10.1007/s12304-015-9248-x

Tabak, M. A., Norouzzadeh, M. S., Wolfson, D. W., Newton, E. J., Boughton, R. K., Ivan, J. S., Odell, E. A., Newkirk, E. S., Conrey, R. Y., Stenglein, J., Iannarilli, F., Erb, J., Brook, R. K., Davis, A. J., Lewis, J., Walsh, D. P., Beasley, J. C., VerCauteren, K. C., Clune, J., & Miller, R. S. (2020). Improving the accessibility and transferability of machine learning algorithms for identification of animals in camera trap images: MLWIC2. Ecology and Evolution, 10(19), 10374–10383. https://doi.org/10.1002/ece3.6692

Van Der Grift, E. A., Van Der Ree, R., Fahrig, L., Findlay, S., Houlahan, J., Jaeger, J. A. G., Klar, N., Madriñan, L. F., & Olson, L. (2013). Evaluating the effectiveness of road mitigation measures. Biodiversity and Conservation, 22(2), 425–448. https://doi.org/10.1007/s10531-012-0421-0

Villemey, A., Jeusset, A., Vargac, M., Bertheau, Y., Coulon, A., Touroult, J., Vanpeene, S., Castagneyrol, B., Jactel, H., Witte, I., Deniaud, N., Flamerie De Lachapelle, F., Jaslier, E., Roy, V., Guinard, E., Le Mitouard, E., Rauel, V., & Sordello, R. (2018). Can linear transportation infrastructure verges constitute a habitat and/or a corridor for insects in temperate landscapes? A systematic review. Environmental Evidence, 7(1), 5. https://doi.org/10.1186/s13750-018-0117-3

Wei, W., Luo, G., Ran, J., & Li, J. (2020). Zilong: A tool to identify empty images in camera-trap data. Ecological Informatics, 55, 101021. https://doi.org/10.1016/j.ecoinf.2019.101021

Wolff, D., Marks, D. A., Petersen, W. A., & Pippit, J. (2017). GPM Ground Validation NASA S-Band Dual Polarimetric (NPOL) Doppler Radar OLYMPEX V2. Dataset available online from the NASA Global Hydrometeorology Resource Center DAAC, Huntsville, Alabama, U.S.A. DOI: http://dx.doi.org/10.5067/GPMGV/OLYMPEX/NPOL/DATA301


Camera traps – Semi-automated identification with AI support

Zooniverse : https://www.zooniverse.org/

Zilong https://github.com/0106WeiWeiDeng/Zilong

AnimalFinder  https://www.sciencedirect.com/science/article/abs/pii/S1574954116301121

MotionMeerkat http://benweinstein.weebly.com/motionmeerkat.html

ClassifyMe https://classifymeapp.com/

MLWIC2 https://github.com/mikeyEcology/MLWIC2

DeepFaune https://www.deepfaune.cnrs.fr/


Conservation drones https://conservationdrones.org

Naturalist databases

GBIF: https://www.gbif.org/

iNaturalist : https://www.inaturalist.org/

Ebird:  https://ebird.org/

OpenObs: https://openobs.mnhn.fr/


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